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Posts
This Week in TechBio 2024/03/04
Published:
Ginkgo bioworks announces the start of its “Ginkgo Technology Network”, as well as a few acquisitions; Novo inks a molecular glue partnership; and Moderna announces going back to rare diseases.
This Week in TechBio 2024/02/26
Published:
Quite a few company announced funding rounds this week, despite layoffs, in particular I am pretty stoked to see Bioptimus finally come out of stealth, I’m pretty curious to see what they’ll come out with.
This Week in TechBio 2024/02/15
Published:
Less excitement than in the previous weeks for Techbio announcements. There were however two cool papers showing the “real world” performances of Foundation models for DNA and proteins, which were rather lackluster.
This Week in TechBio 2024/02/05
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The anouncements this week were mostly focused on AI for diagnostics and automation, as well as some news on new sequencing assays and new RNA therapeutics.
This Week in TechBio 2024/01/29
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Little bit of a “two for one” deal this week as I did not have time to correctly annotate all the news last week, so here comes the TechBio news of the past two weeks.
This Week in TechBio 2024/01/15
Published:
The week started with the JP Morgan Healthcare conference, which is the big pharma conference where deals tend to be announced. Ther NVidia made quite a splash and showed its willingness to become a serious actor in the bio space, probably hoping to ride the wave of GPT and Generative AI to give them a head start.
This Week in TechBio 2024/01/07
Published:
I have been following the field of the emerging techbio industry for a few years from a distance during my PhD, and have been a bit keener in my interest about it in the last few months. Realizing I was spending quite some time doing it each day, by actually going through the news coverage and annotating them, I decided to have other folks benefit from my new procrastination habit.
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
publications
Missdeepcausal: Causal inference from incomplete data using deep latent variable models
Published in arXiv, 2020
Work on infereing propensity scores using VAEs, my role was on building the infrastructure for running a large number of experiments.
Recommended citation: Mayer, Imke and Josse, Julie and Raimundo, Félix and Vert, Jean-Philippe (2020). " MissDeepCausal: Causal Inference from Incomplete Data Using Deep Latent Variable Models ." arXiv. https://arxiv.org/abs/2002.10837
Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis
Published in Genome Biology, 2020
Recommended citation: Felix Raimundo, Celine Vallot, Jean-Philippe Vert (2020). " Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis ." Genome Biology. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02128-7
Machine learning for single-cell genomics data analysis
Published in Current Opinion in Systems Biology, 2021
Recommended citation: Felix Raimundo, Laetitia Meng-Papaxanthos, Celine Vallot, Jean-Philippe Vert (2021). " Machine learning for single-cell genomics data analysis ." Current Opinion in Systems Biology. https://www.sciencedirect.com/science/article/abs/pii/S2452310021000172
Methods, systems, and media for presenting content organized by category
Published in US Patent, 2021
Recommended citation: Alexander Pak, Felix Raimundo, Sertan Girgin, Raphael Marinier, Vincent Simonet (2021). " Methods, systems, and media for presenting content organized by category ." US Patent. https://patents.google.com/patent/US11036743B2/en
Best practices for single-cell histone modification analysis
Published in Genome Biology, 2023
Recommended citation: Felix Raimundo, Pacôme Prompsy, Jean-Philippe Vert, Celine Vallot (2023). " Best practices for single-cell histone modification analysis ." Genome Biology. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-02981-2
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.